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Publications from the
de la Torre
Lab
2023
Genomic assessment of the contribution of the Wolbachia endosymbiont of Eurosta solidaginis to gall induction.
Fiutek N, Couger MB, Pirro S, Roy SW, de la Torre JR, and Connor EF.
Int. J. Mol. Sci.
2023, 24(11), 9613.
doi: 10.3390/ijms24119613
2022
Ammonia-oxidizing archaea possess a wide range of cellular ammonia affinities.
Jung MY, Sedlacek CJ, Kits KD, Mueller AJ, Rhee SR, Hink L, Nicol GW, Bayer B, Lehtovirta-Morley L, Wright C, de la Torre JR, Herbold CW, Pjevac P, Daims H, Wagner M.
ISME J.
2022 Jan;16(1):272-283. [Epub 27 Jul 2021]
doi: 10.1038/s41396-021-01064-z.
2019
Novel Caudovirales associated with Marine Group I Thaumarchaeota assembled from metagenomes.
López-Pérez M, Haro-Moreno JM, de la Torre JR, Rodriguez-Valera F.
Environ Microbiol.
(2019) 21(6): 1980-1988. [Epub 28 October 2018]
doi:
2018
Fine metagenomic profile of the Mediterranean stratified and mixed water columns revealed by assembly and recruitment.
Haro-Moreno JM, López-Pérez M, de la Torre JR, Picazo A, Camacho A, Rodriguez-Valera F.
Microbiome
, (2018) 10;6(1):128.
doi: 10.1186/s40168-018-0513-5.
Cultivation and genomic analysis of Candidatus Nitrosocaldus islandicus, a novel obligately thermophilic ammonia-oxidizing Thaumarchaeon.
Daebeler A, Herbold C, Vierheilig J, Sedlacek CJ, Pjevac P, Albertsen M, Kirkegaard RH, de la Torre JR, Daims H, Wagner M.
Frontiers in Microbiology
, (2018) 9:193.
doi:
2017
Chemotaxonomic characterization of the thaumarchaeal lipidome.
Elling FJ, Könneke M, Nicol GW, Stieglmeier M, Bayer B, Spieck E, de la Torre JR, Becker KW, Thomm M, Prosser JI, Herndl GJ, Schleper C, and Hinrichs KU.
Environ Microbiol.
, 2017, 19 (7):2681-2700.
doi:
Candidatus Nitrosocaldaceae.
Qin W, Jewell TNM‡^, Russell VV†, Hedlund BP, de la Torre JR, and Stahl DA.
Bergey's Manual of Systematics of Archaea and Bacteria
. 2017, 1-2.
doi:
Candidatus Nitrosocaldales.
Qin W, Jewell TNM, Russell VV†, Hedlund BP, de la Torre JR, and Stahl DA.
Bergey's Manual of Systematics of Archaea and Bacteria
. 2017, 1-2.
doi:
Candidatus Nitrosocaldus.
Qin W, Jewell TNM, Russell VV, Hedlund BP, de la Torre JR, and Stahl DA.
Bergey's Manual of Systematics of Archaea and Bacteria
. 2017, 1-5.
doi: 10.1002/9781118960608.gbm01287
2015
Distribution of ether lipids and composition of the archaeal community in terrestrial geothermal springs: impact of environmental variables.
Xie W, Zhang CL, Wang J, Chen Y, Zhu Y, de la Torre JR, Dong H, Hartnett HE, Hedlund BP, and Klotz MG.
Environ. Microbiol.
, (2015) 17(5):1600-14.
doi: 10.1111/1462-2920.12595.
2014
Ammonia availability shapes the seasonal distribution and activity of archaeal and bacterial ammonia oxidizers in the Puget Sound Estuary.
Urakawa H, Martens-Habbena W, Huguet C, de la Torre JR, Ingalls AE, Devol AH and Stahl DA.
Limnol. Oceanogr.
, (2014)
59(4)
:1321-1335.
doi: 10.4319/lo.2014.59.4.1321
Competition for Ammonia Influences the Structure of Chemotrophic Communities in Geothermal Springs.
Hamilton TL, Koonce E, Howells A, Havig JR, Jewell T, de la Torre JR, Peters JW, and Boyd ES.
Appl Environ Microbiol.
, (2014)
80
:653-661.
doi: 10.1128/AEM.02577-13
2012
Physiology and diversity of ammonia-oxidizing archaea.
Stahl DA, and de la Torre JR.
Annu. Rev. Microbiol.
, (2012)
66
:83-101.
doi: 10.1146/annurev-micro-092611-150128
2011
Cdv-based cell division and cell cycle organization in the thaumarchaeon Nitrosopumilus maritimus.
Pelve EA, Lindås AC, Martens-Habbena W, de la Torre JR, Stahl DA, and Bernander R.
Mol. Microbiol.
, (2011)
82
(3):555-66.
doi: 10.1111/j.1365-2958.2011.07834.x
Measuring nitrification, denitrification, and related biomarkers in terrestrial geothermal ecosystems.
Dodsworth JA, Hungate B, de la Torre JR, Jiang H, and Hedlund BP.
Methods Enzymol.
, (2011)
486
:171-203.
doi: 10.1016/b978-0-12-381294-0.00008-0
2010
The
Nitrosopumilus maritimus
genome reveals unique mechanisms for nitrification and autotrophy in globally distributed marine
Archaea
.
Walker CB, de la Torre JR, Klotz MG, Urakawa H, Pinel N, Arp DJ, Brochier-Armanet C, Chain PSG, Chan PP, Golabgir-Anbarani A, Hemp J, Hügler M, Karr EA, Könneke M, Lang D, Lowe T, Martens-Habbena W, Sayavedra-Soto LA, Shin M, Sievert SM, Rosenzweig AC, Manning G, and Stahl DA.
Proc. Natl. Acad. Sci. USA
, (2010)
107
(19):8818-23.
doi: 10.1073/pnas.0913533107
Abundance of ammonia-oxidizing archaea and bacteria along an estuarine salinity gradient in relation to potential nitrification rates.
Bernhard AE, Landry ZC, Blevins A, de la Torre JR, Giblin AE, and Stahl DA.
Appl. Environ. Microbiol.
, (2010)
76
(4):1285-9.
doi: 10.1128/aem.02018-09
2009
Ammonia oxidation kinetics determine niche separation of nitrifying
Archaea
and
Bacteria
.
Martens-Habbena W, Berube PM, Urakawa H, de la Torre JR and Stahl DA.
Nature
, (2009)
461
:976-9.
doi: 10.1038/nature08465
2008
Cultivation of a thermophilic ammonia oxidizing archaeon synthesizing crenarchaeol.
de la Torre JR, Walker CB, Ingalls AE, Könneke M, and Stahl DA.
Environ Microbiol
., (2008)
10
(3):810-8.
doi: 10.1111/j.1462-2920.2007.01506.x
2007
Nitrosomonas Nm143-like ammonia oxidizers and Nitrospira marina-like nitrite oxidizers dominate the nitrifier community in a marine aquaculture biofilm.
Foesel BU, Gieseke A, Schwermer C, Stief P, Koch L, Cytryn E, de la Torre JR, van Rijn J, Minz D, Drake HL, and Schramm A.
FEMS Microbiol Ecol
., (2007)
63
(2):192-204.
doi: 10.1111/j.1574-6941.2007.00418.x
2006
Genomic analysis of the uncultivated marine crenarchaeon, Cenarchaeum symbiosum.
Hallam SJ, Konstantinidis KT, Putnam N, Schleper C, Watanabe Y, Sugahara J, Preston C, de la Torre J, Richardson PM, and DeLong EF.
Proc. Natl. Acad. Sci. USA
, (2006)
103
(48):18296-18301.
doi: 10.1073/pnas.0608549103
2005
Isolation of an autotrophic ammonia-oxidizing marine archaeon.
Könneke M, Bernhard AE, de la Torre JR, Walker CB, Waterbury JB, and Stahl DA.
Nature
, (2005)
437
:543-6.
doi: 10.1038/nature03911
2004
Phylogenetic screening of ribosomal RNA gene-containing clones in Bacterial Artificial Chromosome (BAC) libraries from different depths in Monterey Bay.
Suzuki MT, Preston CM, Béjà O, de la Torre JR, Steward GF, and DeLong EF.
Environ. Microbiol.
, (2004)
48
:473-488.
doi: 10.1007/s00248-004-0213-5
2003
Proteorhodopsin genes are distributed among divergent marine bacterial taxa.
de la Torre JR, Christianson LM, Béjà O, Suzuki MT, Karl DM, Heidelberg JF and DeLong EF.
Proc. Natl. Acad. Sci. USA
, (2003)
100
:12830-12835.
doi: 10.1073/pnas.2133554100
Molecular characterization of cryptoendolithic communities from the McMurdo Dry Valleys, Antarctica.
de la Torre JR, Goebel BM, Friedmann EI, and Pace NR.
Appl. Environ. Microbiol.
, (2003)
69
:3858-67.
doi: 10.1128/aem.69.7.3858-3867.2003
Home
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